HHTNVBGXB_n02_CA290_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHTNVBGXB_n02_CA290_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58978851
Sequences flagged as poor quality	0
Sequence length	55
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACAT	478458	0.8112365566429907	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCG	284216	0.48189477275506776	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCAGGCATTGAGGCAGCGAGCGC	228242	0.38698956681946894	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAA	109817	0.18619725229981168	No Hit
GTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAACTA	76428	0.12958543393800603	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCGCA	72914	0.12362736601972799	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	857145	47.522755	1
AGCAGTG	959855	42.372986	2
GCAGTGG	1243185	32.704597	3
AGTGGTA	1292560	31.449028	5
CAGTGGT	1382430	29.435314	4
GTGGTAT	1422805	28.540306	6
TGGTATC	1420585	28.511667	7
GGTATCA	1453850	27.851894	8
GTATCAA	1466290	27.62529	9
TATCAAC	1470860	27.529593	10
ATCAACG	1482445	27.294882	11
TCAACGC	1485160	27.197908	12
CAACGCA	1491880	27.076965	13
AACGCAG	1505310	26.873243	14
ACGCAGA	1508735	26.81318	15
AGAGTAC	1504595	26.548527	19
GCAGAGT	1517785	26.497295	17
CAGAGTA	1515550	26.478909	18
GAGTACA	1505200	26.478422	20
AGTACAT	1500120	26.37246	21