FastQCFastQC Report
Wed 5 Jun 2019
HHTNVBGXB_n01_CA290_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHTNVBGXB_n01_CA290_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58978851
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACAA144800.018.4498371
GCCCGAA114650.017.8025531
CCCGAAG111900.017.5910851
TGCGACG123850.017.448491
CCGGTGA118300.017.290481
AGACATA190150.017.0533568
TAACGAC177950.016.9605621
CTGGACG87850.016.77071
GGAGGAT134550.016.657881
GCGGAAA98400.016.616371
GCGACGT66750.016.6115742
CATGACG115100.016.4660228
CGAGGAA87200.016.3026581
AAACGAA122900.016.2941591
TGGGAAG127800.016.1859931
GGCACGT149950.016.15051
CGGGCGT71500.016.12263
GGCGAGA56400.016.0899624
TGTGGCG91000.015.9967161
AACAGAC99100.015.8169275
Produced by FastQC (version 0.11.5)