FastQCFastQC Report
Thu 30 Mar 2017
HHTJGBCXY_l02n02.33200000083c1e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHTJGBCXY_l02n02.33200000083c1e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163100018
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG5400186833.10966403449447No Hit
CCTCATTC3937341324.14065521439734ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA3423008520.987174262604924No Hit
GTGGCAAT2918783217.89566448729638No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)