FastQCFastQC Report
Thu 30 Mar 2017
HHTJGBCXY_l02n01.33100000083c11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHTJGBCXY_l02n01.33100000083c11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163100018
Sequences flagged as poor quality0
Sequence length27
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTATTA660050.018.173851
TGCTACC569350.018.0280191
CGTCTAC651100.017.7209051
CGTGAGC489700.017.6931631
ACCCACT569600.017.390381
GACCTGG521850.017.3791621
CCGTACT567250.017.3048061
TTTACTG379550.017.1382711
ACTGCTC492900.017.113071
GGGAGAT649150.017.0514371
GACTAAC366150.017.030041
TATTACA399750.017.0264823
CCGTGGA488700.017.008311
GGGACCT529050.016.9517731
CTATTAC402150.016.9405522
ATCGAGT652400.016.9326361
CATATTC412050.016.8842121
CAGACTG414800.016.8664610
CTGATAG431200.016.8661961
GCATGCG494550.016.828391
Produced by FastQC (version 0.11.2)