FastQCFastQC Report
Thu 30 Mar 2017
HHNK2BCXY_l02n02.33200000083bf3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHNK2BCXY_l02n02.33200000083bf3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168180142
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT5413903532.191098399714754No Hit
TGTGCGGG4527686926.92164988182731No Hit
ACCATAAC3774917722.445680299163975No Hit
GTGTATTA2461119514.633829361376089No Hit
TTCCCGAC3975220.23636678817883267No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)