FastQCFastQC Report
Thu 30 Mar 2017
HHNK2BCXY_l01n02.33200000083c01.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHNK2BCXY_l01n02.33200000083c01.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170125594
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC5087722329.9056842675888No Hit
GCAGTAGA3982513123.409253166222594No Hit
CAGTACTG3804957822.365581277558977No Hit
AGTAGTCT3503157120.59159364345849No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)