[2022-03-03 17:29:38,874] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-03-03 17:29:38,874] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-03-03 17:29:38,874] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-03-03 17:29:38,875] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-03-03 17:29:38,875] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-03-03 17:29:38,876] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HHMNLAFX3/merged [2022-03-03 17:29:39,514] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-03-03 17:29:39,514] multiqc [INFO ] This is MultiQC v1.9 [2022-03-03 17:29:39,514] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HHMNLAFX3/merged [2022-03-03 17:29:39,514] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HHMNLAFX3/merged [2022-03-03 17:29:39,514] multiqc [INFO ] Template : default [2022-03-03 17:29:39,514] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-03-03 17:29:39,514] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HHMNLAFX3/merged [2022-03-03 17:29:39,515] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-03-03 17:29:39,515] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-15535617/tmpoep_akbs [2022-03-03 17:29:39,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr534_fastqc.html [2022-03-03 17:29:39,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr534_fastqc.html [2022-03-03 17:29:39,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr534_fastqc.html [2022-03-03 17:29:39,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr534_fastqc.html [2022-03-03 17:29:39,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr530_fastqc.html [2022-03-03 17:29:39,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr530_fastqc.html [2022-03-03 17:29:39,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr527_fastqc.html [2022-03-03 17:29:39,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr527_fastqc.html [2022-03-03 17:29:39,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr542_fastqc.html [2022-03-03 17:29:39,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr542_fastqc.html [2022-03-03 17:29:39,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:39,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2022-03-03 17:29:43,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr544_fastqc.html [2022-03-03 17:29:43,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr544_fastqc.html [2022-03-03 17:29:44,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr525_fastqc.html [2022-03-03 17:29:44,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr525_fastqc.html [2022-03-03 17:29:44,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr528_fastqc.html [2022-03-03 17:29:44,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr528_fastqc.html [2022-03-03 17:29:44,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr535_fastqc.html [2022-03-03 17:29:44,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr535_fastqc.html [2022-03-03 17:29:44,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr526_fastqc.html [2022-03-03 17:29:44,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr526_fastqc.html [2022-03-03 17:29:44,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_undetermined_fastqc.html [2022-03-03 17:29:44,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_undetermined_fastqc.html [2022-03-03 17:29:44,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr539_fastqc.html [2022-03-03 17:29:44,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr539_fastqc.html [2022-03-03 17:29:44,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr549_fastqc.html [2022-03-03 17:29:44,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr549_fastqc.html [2022-03-03 17:29:44,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr529_fastqc.html [2022-03-03 17:29:44,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr529_fastqc.html [2022-03-03 17:29:44,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr548_fastqc.html [2022-03-03 17:29:44,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr548_fastqc.html [2022-03-03 17:29:44,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr538_fastqc.html [2022-03-03 17:29:44,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr538_fastqc.html [2022-03-03 17:29:44,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr533_fastqc.html [2022-03-03 17:29:44,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr533_fastqc.html [2022-03-03 17:29:44,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr532_fastqc.html [2022-03-03 17:29:44,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr532_fastqc.html [2022-03-03 17:29:44,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr550_fastqc.html [2022-03-03 17:29:44,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr550_fastqc.html [2022-03-03 17:29:44,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr540_fastqc.html [2022-03-03 17:29:44,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr540_fastqc.html [2022-03-03 17:29:44,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr536_fastqc.html [2022-03-03 17:29:44,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr536_fastqc.html [2022-03-03 17:29:44,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr537_fastqc.html [2022-03-03 17:29:44,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr537_fastqc.html [2022-03-03 17:29:44,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr532_fastqc.html [2022-03-03 17:29:44,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr532_fastqc.html [2022-03-03 17:29:44,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr531_fastqc.html [2022-03-03 17:29:44,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr531_fastqc.html [2022-03-03 17:29:44,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr550_fastqc.html [2022-03-03 17:29:44,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr550_fastqc.html [2022-03-03 17:29:44,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr535_fastqc.html [2022-03-03 17:29:44,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr535_fastqc.html [2022-03-03 17:29:44,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr548_fastqc.html [2022-03-03 17:29:44,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr548_fastqc.html [2022-03-03 17:29:45,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr541_fastqc.html [2022-03-03 17:29:45,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr541_fastqc.html [2022-03-03 17:29:45,056] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr540_fastqc.html [2022-03-03 17:29:45,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr540_fastqc.html [2022-03-03 17:29:45,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr527_fastqc.html [2022-03-03 17:29:45,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr527_fastqc.html [2022-03-03 17:29:45,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr528_fastqc.html [2022-03-03 17:29:45,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr528_fastqc.html [2022-03-03 17:29:45,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr547_fastqc.html [2022-03-03 17:29:45,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr547_fastqc.html [2022-03-03 17:29:45,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr544_fastqc.html [2022-03-03 17:29:45,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr544_fastqc.html [2022-03-03 17:29:45,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr541_fastqc.html [2022-03-03 17:29:45,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr541_fastqc.html [2022-03-03 17:29:45,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr536_fastqc.html [2022-03-03 17:29:45,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr536_fastqc.html [2022-03-03 17:29:45,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr543_fastqc.html [2022-03-03 17:29:45,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr543_fastqc.html [2022-03-03 17:29:45,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr530_fastqc.html [2022-03-03 17:29:45,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr530_fastqc.html [2022-03-03 17:29:45,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_undetermined_fastqc.html [2022-03-03 17:29:45,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_undetermined_fastqc.html [2022-03-03 17:29:45,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr549_fastqc.html [2022-03-03 17:29:45,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr549_fastqc.html [2022-03-03 17:29:45,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr539_fastqc.html [2022-03-03 17:29:45,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr539_fastqc.html [2022-03-03 17:29:45,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr542_fastqc.html [2022-03-03 17:29:45,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr542_fastqc.html [2022-03-03 17:29:45,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr533_fastqc.html [2022-03-03 17:29:45,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr533_fastqc.html [2022-03-03 17:29:45,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr546_fastqc.html [2022-03-03 17:29:45,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr546_fastqc.html [2022-03-03 17:29:45,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr537_fastqc.html [2022-03-03 17:29:45,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr537_fastqc.html [2022-03-03 17:29:45,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr547_fastqc.html [2022-03-03 17:29:45,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr547_fastqc.html [2022-03-03 17:29:45,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr529_fastqc.html [2022-03-03 17:29:45,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr529_fastqc.html [2022-03-03 17:29:45,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr546_fastqc.html [2022-03-03 17:29:45,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr546_fastqc.html [2022-03-03 17:29:45,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr538_fastqc.html [2022-03-03 17:29:45,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr538_fastqc.html [2022-03-03 17:29:45,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr545_fastqc.html [2022-03-03 17:29:45,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr545_fastqc.html [2022-03-03 17:29:46,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr545_fastqc.html [2022-03-03 17:29:46,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n02_dpr545_fastqc.html [2022-03-03 17:29:46,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr526_fastqc.html [2022-03-03 17:29:46,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr526_fastqc.html [2022-03-03 17:29:46,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr525_fastqc.html [2022-03-03 17:29:46,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr525_fastqc.html [2022-03-03 17:29:46,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr543_fastqc.html [2022-03-03 17:29:46,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr543_fastqc.html [2022-03-03 17:29:46,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr531_fastqc.html [2022-03-03 17:29:46,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMNLAFX3_n01_dpr531_fastqc.html [2022-03-03 17:29:46,629] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-03-03 17:29:46,633] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-03-03 17:29:46,650] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-03-03 17:29:46,652] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-03-03 17:29:46,665] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 27 samples (table) [2022-03-03 17:29:46,670] multiqc [DEBUG ] No samples found: conpair [2022-03-03 17:29:46,676] multiqc [DEBUG ] No samples found: peddy [2022-03-03 17:29:46,681] multiqc [DEBUG ] No samples found: somalier [2022-03-03 17:29:46,688] multiqc [DEBUG ] No samples found: methylQA [2022-03-03 17:29:46,699] multiqc [DEBUG ] No samples found: mosdepth [2022-03-03 17:29:46,705] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-03-03 17:29:46,708] multiqc [DEBUG ] No samples found: qualimap [2022-03-03 17:29:46,713] multiqc [DEBUG ] No samples found: preseq [2022-03-03 17:29:46,719] multiqc [DEBUG ] No samples found: quast [2022-03-03 17:29:46,725] multiqc [DEBUG ] No samples found: qorts [2022-03-03 17:29:46,731] multiqc [DEBUG ] No samples found: rna_seqc [2022-03-03 17:29:46,737] multiqc [DEBUG ] No samples found: rockhopper [2022-03-03 17:29:46,743] multiqc [DEBUG ] No samples found: rsem [2022-03-03 17:29:46,757] multiqc [DEBUG ] No samples found: rseqc [2022-03-03 17:29:46,764] multiqc [DEBUG ] No samples found: busco [2022-03-03 17:29:46,769] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-03-03 17:29:46,775] multiqc [DEBUG ] No samples found: disambiguate [2022-03-03 17:29:46,780] multiqc [DEBUG ] No samples found: supernova [2022-03-03 17:29:46,794] multiqc [DEBUG ] No samples found: deeptools [2022-03-03 17:29:46,798] multiqc [DEBUG ] No samples found: sargasso [2022-03-03 17:29:46,803] multiqc [DEBUG ] No samples found: verifybamid [2022-03-03 17:29:46,808] multiqc [DEBUG ] No samples found: mirtrace [2022-03-03 17:29:46,812] multiqc [DEBUG ] No samples found: happy [2022-03-03 17:29:46,817] multiqc [DEBUG ] No samples found: mirtop [2022-03-03 17:29:46,823] multiqc [DEBUG ] No samples found: homer [2022-03-03 17:29:46,828] multiqc [DEBUG ] No samples found: macs2 [2022-03-03 17:29:46,834] multiqc [DEBUG ] No samples found: theta2 [2022-03-03 17:29:46,838] multiqc [DEBUG ] No samples found: snpeff [2022-03-03 17:29:46,848] multiqc [DEBUG ] No samples found: gatk [2022-03-03 17:29:46,855] multiqc [DEBUG ] No samples found: htseq [2022-03-03 17:29:46,860] multiqc [DEBUG ] No samples found: bcftools [2022-03-03 17:29:46,866] multiqc [DEBUG ] No samples found: featureCounts [2022-03-03 17:29:46,872] multiqc [DEBUG ] No samples found: fgbio [2022-03-03 17:29:46,885] multiqc [DEBUG ] No samples found: dragen [2022-03-03 17:29:46,890] multiqc [DEBUG ] No samples found: dedup [2022-03-03 17:29:46,894] multiqc [DEBUG ] No samples found: damageprofiler [2022-03-03 17:29:46,919] multiqc [DEBUG ] No samples found: biobambam2 [2022-03-03 17:29:46,923] multiqc [DEBUG ] No samples found: mtnucratio [2022-03-03 17:29:46,925] multiqc [DEBUG ] No samples found: picard [2022-03-03 17:29:46,930] multiqc [DEBUG ] No samples found: prokka [2022-03-03 17:29:46,934] multiqc [DEBUG ] No samples found: samblaster [2022-03-03 17:29:46,949] multiqc [DEBUG ] No samples found: samtools [2022-03-03 17:29:46,953] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-03-03 17:29:46,958] multiqc [DEBUG ] No samples found: bamtools [2022-03-03 17:29:46,962] multiqc [DEBUG ] No samples found: jellyfish [2022-03-03 17:29:46,971] multiqc [DEBUG ] No samples found: vcftools [2022-03-03 17:29:46,976] multiqc [DEBUG ] No samples found: longranger [2022-03-03 17:29:46,981] multiqc [DEBUG ] No samples found: stacks [2022-03-03 17:29:46,986] multiqc [DEBUG ] No samples found: varscan2 [2022-03-03 17:29:47,002] multiqc [DEBUG ] No samples found: bbmap [2022-03-03 17:29:47,009] multiqc [DEBUG ] No samples found: bismark [2022-03-03 17:29:47,015] multiqc [DEBUG ] No samples found: biscuit [2022-03-03 17:29:47,020] multiqc [DEBUG ] No samples found: hicexplorer [2022-03-03 17:29:47,025] multiqc [DEBUG ] No samples found: hicup [2022-03-03 17:29:47,029] multiqc [DEBUG ] No samples found: hicpro [2022-03-03 17:29:47,034] multiqc [DEBUG ] No samples found: salmon [2022-03-03 17:29:47,038] multiqc [DEBUG ] No samples found: kallisto [2022-03-03 17:29:47,045] multiqc [DEBUG ] No samples found: slamdunk [2022-03-03 17:29:47,050] multiqc [DEBUG ] No samples found: star [2022-03-03 17:29:47,054] multiqc [DEBUG ] No samples found: hisat2 [2022-03-03 17:29:47,059] multiqc [DEBUG ] No samples found: tophat [2022-03-03 17:29:47,063] multiqc [DEBUG ] No samples found: bowtie2 [2022-03-03 17:29:47,068] multiqc [DEBUG ] No samples found: bowtie1 [2022-03-03 17:29:47,072] multiqc [DEBUG ] No samples found: snpsplit [2022-03-03 17:29:47,076] multiqc [DEBUG ] No samples found: kat [2022-03-03 17:29:47,080] multiqc [DEBUG ] No samples found: leehom [2022-03-03 17:29:47,085] multiqc [DEBUG ] No samples found: adapterRemoval [2022-03-03 17:29:47,089] multiqc [DEBUG ] No samples found: clipandmerge [2022-03-03 17:29:47,093] multiqc [DEBUG ] No samples found: cutadapt [2022-03-03 17:29:47,100] multiqc [DEBUG ] No samples found: flexbar [2022-03-03 17:29:47,105] multiqc [DEBUG ] No samples found: kaiju [2022-03-03 17:29:47,111] multiqc [DEBUG ] No samples found: kraken [2022-03-03 17:29:47,117] multiqc [DEBUG ] No samples found: malt [2022-03-03 17:29:47,124] multiqc [DEBUG ] No samples found: trimmomatic [2022-03-03 17:29:47,129] multiqc [DEBUG ] No samples found: sickle [2022-03-03 17:29:47,136] multiqc [DEBUG ] No samples found: skewer [2022-03-03 17:29:47,140] multiqc [DEBUG ] No samples found: sortmerna [2022-03-03 17:29:47,146] multiqc [DEBUG ] No samples found: biobloomtools [2022-03-03 17:29:47,151] multiqc [DEBUG ] No samples found: fastq_screen [2022-03-03 17:29:47,156] multiqc [DEBUG ] No samples found: afterqc [2022-03-03 17:29:47,162] multiqc [DEBUG ] No samples found: fastp [2022-03-03 17:29:48,606] multiqc.modules.fastqc.fastqc [INFO ] Found 54 reports [2022-03-03 17:29:49,681] multiqc [DEBUG ] No samples found: pycoqc [2022-03-03 17:29:49,687] multiqc [DEBUG ] No samples found: minionqc [2022-03-03 17:29:49,694] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-03-03 17:29:49,699] multiqc [DEBUG ] No samples found: clusterflow [2022-03-03 17:29:49,706] multiqc [DEBUG ] No samples found: bcl2fastq [2022-03-03 17:29:49,711] multiqc [DEBUG ] No samples found: interop [2022-03-03 17:29:49,716] multiqc [DEBUG ] No samples found: ivar [2022-03-03 17:29:49,720] multiqc [DEBUG ] No samples found: flash [2022-03-03 17:29:49,725] multiqc [DEBUG ] No samples found: seqyclean [2022-03-03 17:29:49,725] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-03-03 17:29:49,725] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-03-03 17:29:49,725] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-03-03 17:29:49,725] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-03-03 17:29:49,793] multiqc [INFO ] Compressing plot data [2022-03-03 17:29:50,776] multiqc [INFO ] Report : multiqc_report.html [2022-03-03 17:29:50,776] multiqc [INFO ] Data : multiqc_data [2022-03-03 17:29:50,776] multiqc [DEBUG ] Moving data file from '/state/partition1/job-15535617/tmpoep_akbs/multiqc_data' to '/scratch/gencore/logs/html/HHMNLAFX3/merged/multiqc_data' [2022-03-03 17:29:50,935] multiqc [INFO ] MultiQC complete