FastQCFastQC Report
Wed 23 Feb 2022
HHMMVAFX3_n02_dpr496.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHMMVAFX3_n02_dpr496.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3529364
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40950.1160265702262504No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG39320.11140817439062675No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)