Sample	Filename	File type	Encoding	Total Sequences	Sequences flagged as poor quality	Sequence length	%GC	total_deduplicated_percentage	avg_sequence_length	basic_statistics	per_base_sequence_quality	per_tile_sequence_quality	per_sequence_quality_scores	per_base_sequence_content	per_sequence_gc_content	per_base_n_content	sequence_length_distribution	sequence_duplication_levels	overrepresented_sequences	adapter_content
HHMFFAFX3_n01_Tvag_CHAR29_pH4.5_rep2_new	HHMFFAFX3_n01_Tvag_CHAR29_pH4.5_rep2_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	27977282.0	0.0	74.0	44.0	38.62125131767597	74.0	pass	warn	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_Tvag_CHAR29_pH4_rep1_new	HHMFFAFX3_n01_Tvag_CHAR29_pH4_rep1_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	20071390.0	0.0	74.0	43.0	46.64655282550655	74.0	pass	warn	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep1_reseq	HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep1_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	30721028.0	0.0	74.0	44.0	35.4316104866628	74.0	pass	warn	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep2_reseq	HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep2_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	24681438.0	0.0	74.0	44.0	38.983146301939065	74.0	pass	warn	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep3_new	HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep3_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	27328182.0	0.0	74.0	44.0	33.89495875754837	74.0	pass	warn	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep3_reseq	HHMFFAFX3_n01_Tvag_CHAR29_pH6.2_rep3_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	24297883.0	0.0	74.0	44.0	40.20583718714286	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n01_undetermined	HHMFFAFX3_n01_undetermined.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5682531.0	0.0	74.0	44.0	44.674009813109656	74.0	pass	fail	pass	pass	fail	warn	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH4.5_rep2_new	HHMFFAFX3_n02_Tvag_CHAR29_pH4.5_rep2_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	27977282.0	0.0	74.0	44.0	46.82416395080893	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH4_rep1_new	HHMFFAFX3_n02_Tvag_CHAR29_pH4_rep1_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	20071390.0	0.0	74.0	43.0	47.33844744542031	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep1_reseq	HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep1_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	30721028.0	0.0	74.0	44.0	42.91384773620554	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep2_reseq	HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep2_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	24681438.0	0.0	74.0	44.0	46.284649667314625	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep3_new	HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep3_new.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	27328182.0	0.0	74.0	45.0	42.84318950077331	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep3_reseq	HHMFFAFX3_n02_Tvag_CHAR29_pH6.2_rep3_reseq.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	24297883.0	0.0	74.0	44.0	41.442240618584336	74.0	pass	fail	pass	pass	fail	fail	pass	pass	fail	pass	pass
HHMFFAFX3_n02_undetermined	HHMFFAFX3_n02_undetermined.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5682531.0	0.0	74.0	46.0	53.58771721003737	74.0	pass	fail	pass	pass	warn	fail	pass	pass	warn	fail	pass