HHM3YBGX2_n01_jes_041.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHM3YBGX2_n01_jes_041.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10118355
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	83932	0.8295024240600375	TruSeq Adapter, Index 7 (100% over 63bp)
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGG	14116	0.13950884308763628	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	14000	0.1383624116766016	No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATT	13468	0.13310464003289071	No Hit
CTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGG	10393	0.10271432461106574	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	9750	63.476242	42
TATGCCG	9995	63.126774	46
TCGTATG	10010	62.723255	43
ATGCCGT	10355	60.39819	47
GTATGCC	10745	58.68813	45
ACGTCTG	12590	57.858498	15
CAGTCAC	11315	57.686893	27
AGTCACC	11350	56.840015	28
GCCGTCT	10925	56.83565	49
CACGTCT	12980	56.279217	14
CCGTCTT	11145	55.870148	50
ACACGTC	13185	55.534714	13
GTCTGAA	13240	55.14908	17
CATCTCG	11235	54.933754	39
CGTATGC	11585	54.46311	44
TGCCGTC	11765	53.03922	48
CTCCAGT	13900	51.547626	24
CAGATCA	12350	51.289837	34
CTGAACT	14225	51.238903	19
ACCAGAT	12455	51.08006	32