FastQCFastQC Report
Wed 14 Oct 2020
HHL37AFX2_n01_AH10675-3H-input-rep.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL37AFX2_n01_AH10675-3H-input-rep.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7757921
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGGG93500.011.01053270-74
AGGGGGG98750.010.54262970-74
GAGCACA801600.010.4370979
AGAGCAC834900.010.038188
AAAGGGG107750.09.7427870-74
AAGAGCA935100.09.0400767
GAAGAGC935950.09.00355156
CACACGG26750.08.943793145
GCACACC33600.08.846596145
CGGAAGA959950.08.7708964
TCGGAAG965500.08.7054563
GGAAGAG979250.08.6202485
GATCGGA998250.08.3210961
ATCGGAA1008550.08.2979642
GAGCACC34100.07.866452145
CCAGTCC32050.07.012377145
CGGGGTG66700.06.934680550-54
GCGGGGG59950.06.77221145
AATCGCG59900.06.414763535-39
GCGGGGT68300.06.411325550-54
Produced by FastQC (version 0.11.5)