FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_24_nlp7_dam_nlp7_r1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_24_nlp7_dam_nlp7_r1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12731386
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCCGA4061950.069.258756
GCGGCCG4059150.069.2168665
GGTCGCG4086750.068.978941
GGCCGAG4042600.068.960967
GAGGATC3998350.068.94787611
CGCGGCC4097350.068.8456954
AGGATCT1019700.068.8362312
CCGAGGA4013050.068.776419
CGAGGAT4016850.068.70611610
AGGATCA1285000.068.6977812
AGGATCG790700.068.65816512
GCCGAGG4061100.068.582198
GTCGCGG4108100.068.554812
TCGCGGC4122850.068.2857743
GGATCGT221600.067.45927413
GGATCCG262100.067.355713
GGATCTT308800.067.22085613
GGATCAT359250.067.1805613
GGATCTC297100.067.0295213
GGATCAA372900.066.8515813
Produced by FastQC (version 0.11.2)