FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_16_c_r_bzip1_col_h3k27ac.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_16_c_r_bzip1_col_h3k27ac.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20896892
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC34500.023.23590346
GTATGCC37250.020.95784847
TATGCCG38100.020.85817348
GCCGTCT40400.019.23747351
ATGCCGT42850.018.2191649
TGCCGTC44200.018.05884750
CCGTCTT60950.013.03837252
TCTCGTA63500.012.45959443
CTCGTAT71250.011.34908744
TCGTATG73100.011.30135445
ATCTCGT75550.010.61093242
CACACTG256450.010.5346170
ACTGATA181500.010.43096570
TGGGGGG18950.010.3426181
ACACTGA237900.010.07627470
TATCTCG85200.09.77882841
TCACACT335300.09.64366970
GTCACAC355300.09.43570170
CTGCTTG87650.09.34407759
CTGATAT162950.08.9124670
Produced by FastQC (version 0.11.2)