FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_12_c_r_nlp7_nlp7_h3k27ac.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_12_c_r_nlp7_nlp7_h3k27ac.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37258005
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTCG155600.013.94662133
TCGGAAT158850.013.33255437
GTTTCGG173900.012.49908834
TTTCGGA192400.011.47926635
CGGAATC184550.011.15341638
TTCGGAA203200.010.8520136
ACGTTTC205500.010.71326132
GTCACGT213300.010.10784829
CACGTTT224450.010.05808531
GCGGGGT42350.09.91931752
TCACGTT246800.09.04792630
AGTCACG245350.08.8878828
ATCGGGG77650.08.83624942
CGGGGGT26700.08.78393244
TGCGGGG24800.08.75176651
AATCGGG99800.08.31325641
CGGGGTG61150.08.24354853
AATCGCG63950.07.663741641
GGAATCG213900.07.00454539
CAGTCAC325450.06.92481370
Produced by FastQC (version 0.11.2)