FastQCFastQC Report
Sat 5 Feb 2022
HHKFVAFX3_n01_7797-log-Input-Sir4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHKFVAFX3_n01_7797-log-Input-Sir4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9042676
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC1240401.3717178410461681TruSeq Adapter, Index 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)