FastQCFastQC Report
Tue 18 Jun 2019
HHJHYBGXB_n01_RNA_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHYBGXB_n01_RNA_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113782238
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGATG306300.017.3610671
TGCGACG255950.016.6838071
TCGGGAC178500.016.4950851
TGACTCC319100.016.4301971
AAACGAA238650.016.2795681
GGGATCC188950.016.2641221
AGTAAAC238000.015.8749698
CGGAGAA255750.015.7675771
AGCCGAA133500.015.6296478
CTGGACG172200.015.6097851
GTACGAC174600.015.5287258
AATCGAC267950.015.4726161
ATACCGA242800.015.4393871
CCCGGAA151500.015.2805761
CCCGAAG136850.015.2279631
TAGCCGA139650.015.1777067
TGGAGGA267150.015.1688681
GTTGAAC252750.015.1276081
GAAACCT267150.015.08237651
GGGATGA178950.015.0578761
Produced by FastQC (version 0.11.5)