FastQCFastQC Report
Tue 18 Jun 2019
HHJHYBGXB_n01_RNA_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHYBGXB_n01_RNA_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91595596
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGATG247700.017.1548061
TGCGACG196650.016.8243791
TCGGGAC139850.016.7735211
TGACTCC258800.016.529571
AAACGAA192400.016.4525931
GGGATCC144450.015.8737581
CGGAGAA204250.015.81051
AGTAAAC200550.015.7516298
CTGGACG135950.015.5632261
GTACGAC138450.015.5157588
AGCCGAA107850.015.51217658
TAGCCGA113200.015.4301837
GTTGAAC195400.015.2652711
CCCGGAA119850.015.2211011
GACGTTA210050.015.1696451
AATCGAC216200.015.0740141
ATACCGA194450.014.9777151
CCCGAAG105800.014.9649311
TAAGCAC245600.014.8420071
GCGACGC91550.014.7929462
Produced by FastQC (version 0.11.5)