FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_KN1-GRInput.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_KN1-GRInput.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26665279
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTTC76850.015.0782455
ATCGGCG76900.014.9772262
GATCGGC79550.014.6995741
GCGTTCC79400.014.682266
GTTCCGG88200.013.056668
TCCGGTC90750.012.80414710
TTCCGGT92700.012.572639
CCGGTCC93400.012.40320111
GGTCCAT99600.011.84188513
CGGTCCA100050.011.64876412
TAGGGCC100550.011.55594423
GTTAGGG106850.010.94008221
TTAGGGC107250.010.86666822
CGGTAGT107400.010.78647830
GGTTAGG109300.010.59879420
TGGTTAG112150.010.42307319
TCGAGTA161100.010.3436954
GTTTCGA163550.010.1895481
AGGGCCC116950.010.11513324
TTCGAGT168900.09.7829743
Produced by FastQC (version 0.11.5)