FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_GIF1-GRInput.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_GIF1-GRInput.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25306155
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTTCC75200.012.1969156
GATCGGC80950.011.677561
ATCGGCG80100.011.6254942
GTTCCGG84300.010.7955448
TCCGGTC86850.010.67911610
CCGGTCC88200.010.55525911
TTCCGGT88350.010.4185999
CGGTCCA93050.010.08015912
CCGTAGT75550.09.8684717
GGTCCAT93050.09.81683313
TAGGGCC95300.09.69536723
TTAGGGC98650.09.40160622
GTTAGGC78950.09.3092812
GTTAGGG98100.09.27589621
CCGGTAG97150.09.25852629
CCCTATA83450.09.2277358
CCTATAG82750.09.2203759
GTCCATG100050.09.16494314
AGTTAGG82250.09.10612711
GGTTAGG104100.09.07746520
Produced by FastQC (version 0.11.5)