FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_GIF1-GRChip.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_GIF1-GRChip.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26595060
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGCC181450.010.60980570
GCCATAG181400.010.2838499
CATAGAT188550.010.04224411
ATAGATC170850.09.97634812
TGCCATA195300.09.9288988
TAGATCA197050.09.89315213
CGTAGGT126250.09.7860563
CCATAGA191450.09.68914510
GTTTCCT237050.09.6736691
AATCCGT137450.09.57416159
TGTTAGC203300.09.57274869
CCGTAGG127150.09.35892362
CGTGTTA70250.09.26685467
TGGAGAC221500.08.88011437
GAGACCA221800.08.80495239
TCCGTAG135050.08.78537461
CACATTC229150.08.69052318
GATCACA220300.08.61061615
TCACATT233250.08.49274917
AGACCAT223250.08.44991740
Produced by FastQC (version 0.11.5)