FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_6679-StrepInput.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_6679-StrepInput.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34295239
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC31000.010.27383444
GCACACG220500.06.810129670
GTATGCC52600.06.720307445
ACACGTC176350.06.569906770
CCGTCTT55050.06.03981450
TCTCGTA52300.05.955831541
AGCACAC283550.05.44394569
CACACGT225500.05.308653469
CGTCTGA144000.05.299059469
TAACGCG52700.05.246518657
ATCGGAA515350.05.16879270
GCGTTCC60400.05.15831476
TCGTATG74700.05.060064343
TCGGAAG464150.05.03758468
TTACGGT140150.05.019475527
Produced by FastQC (version 0.11.5)