FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_6679-GRInput.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_6679-GRInput.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17183254
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTTCC51750.011.9063396
CCGGTCC58400.010.60754811
GTTCCGG57900.010.4585498
TCCGGTC58400.010.368010510
TTCCGGT63050.09.7699489
TAGGGCC63000.09.66625423
CGGTCCA63150.09.64329412
GGTCCAT64400.09.56480913
CGGTAGT65000.09.31504230
CCGGTAG63250.09.29610129
GTTAGGG67150.09.27731421
GGTTAGG67500.09.17735920
TTAGGGC66550.09.09803422
GCCCGGT68800.08.90231527
GTTAGGC50000.08.609632512
AGGGCCC73500.08.5235224
CCCGTAA51900.08.49682138
TCCATGG75150.08.42939915
CCGTAGT49900.08.3476017
GGCGTTC77800.08.2346935
Produced by FastQC (version 0.11.5)