FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_6679-GRChip.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_6679-GRChip.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24043261
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTTCC66750.09.6498496
GCCATAG104900.09.2419259
GTTAGCC113400.09.01300370
CCATAGA112100.08.55464910
TAGATCA125550.08.53007813
CCGGTAG73350.08.39788329
TCATACG89750.08.38410723
TCCGGTC80600.08.16356910
CGGTAGT76550.08.09254930
ATACGCT89400.08.06471125
TGCGTTA48000.08.02063510
GATCACA130550.08.01575415
ACGCTAT89550.08.01211827
GAGACCA130050.07.992815539
CGTAGGT77550.07.988296563
CGCGTTA44350.07.970523452
CGTGTTA43950.07.963413767
TACGCTA90400.07.898067526
TAGGGCC79650.07.865385523
TGGAGAC134150.07.82683337
Produced by FastQC (version 0.11.5)