FastQCFastQC Report
Thu 13 Jun 2019
HHJHWBGXB_n01_5958-GRInput.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJHWBGXB_n01_5958-GRInput.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18092406
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTTCC49500.09.4059426
ATCGGCG54200.09.365312
GGCGTTC51400.09.0582025
GATCGGC55100.08.7688881
CCGGTCC56450.08.49405911
TCCGGTC57000.08.47359410
GTTCCGG56900.08.304558
TAGGGCC56950.08.29645623
GTTTCGA91850.08.2336361
CCCTATA49750.08.16130358
TCGAGTA89600.08.08746054
CCTATAG50400.08.0554919
GGTCCAT61800.08.0418313
TGCGTTA44650.07.91704910
CCGGTAG57650.07.77073529
CTCGTAA80250.07.762964226
TTCCGGT60900.07.75855979
AGTCGTA52450.07.74045218
CGGTCCA62000.07.733681712
CCCGTAA48300.07.68082338
Produced by FastQC (version 0.11.5)