FastQCFastQC Report
Sun 22 Dec 2024
HHJFFBGYW_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHJFFBGYW_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64123
Sequences flagged as poor quality0
Sequence length86
%GC79

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1128617.600548944996337No Hit
GTAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG58129.063830450852269No Hit
GAAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG43386.765123278698751No Hit
GAAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG22593.5229168940941626No Hit
GTAGGGGGTTGTGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG17062.6605118288289695No Hit
GTAGGGGGTTTGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG16772.615286246744538No Hit
GTAGGGGGTTGTGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG9121.4222665814138453No Hit
GTAGGGGGTTTTGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG8611.3427319370584656No Hit
GTAGGGGGTTTGGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG8341.3006253606350295No Hit
GAAGGGGGTTGTGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG6901.07605695304337No Hit
GTAGGGGGTTGGGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG6721.0479859020944122No Hit
GAAGGGGGTTTGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG6641.0355098794504312No Hit
GNAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG6400.998081811518488No Hit
GTAGGGGGTTTTGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG5830.9091901501801225No Hit
GTAGGGGGTTGGGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG4010.6253606350295526No Hit
GTAGGGGGTTTGGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG3620.5645400246401447No Hit
GAAGGGGGTTGTGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG3520.5489449963351684No Hit
GAAGGGGGTTTTGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG3490.5442664878436755No Hit
GAAGGGGGTTTGGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG3280.511516928403225No Hit
GNAGGGGGTTGGGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG3250.5068384199117321No Hit
GAAGGGGGTTGGGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG2840.44289880386132896No Hit
GTAGGGGGTTTTGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG2490.3883162047939117No Hit
GAAGGGGGTTTTGGGTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG2380.37116167365843766No Hit
GTAGGGGGTTGGGGGTGGGGTTCCGTGCGGGGGGGGGGGGGGGGGGGGGG2060.3212575830825133No Hit
GTAGGGGGTTGGGGGTGGGGTTCCGTGCGGGGGGTGGGGGGGGGGGGGGG1900.2963055377945511No Hit
GTAGGGGGTTGGGGTTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1870.29162702930305817No Hit
GTAGGGGGTTGTGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1820.28382951515057003No Hit
GTAGGGGGTTTGGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG1730.2697939896760913No Hit
GTAGGGGGTTTTGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG1670.26043697269310545No Hit
GAAGGGGGTTGGGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG1470.2292469160831527No Hit
GAAGGGGGTTTGGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1380.21521139060867397No Hit
GTAGGGGGTTGTGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG1240.19337835098170705No Hit
GAAGGGGGTTTTGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1120.1746643170157354No Hit
GNAGGGGGTTTGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG1010.15750978588026138No Hit
GAAGGGGGTTGGGGGTGGGGTTCCGTGCGGGGGGGGGGGGGGGGGGGGGG980.15283127738876845No Hit
GAAGGGGGTTGGGGGTGGGGTTCCGTGCGGGGGGTGGGGGGGGGGGGGGG960.14971227172777318No Hit
GNAGGGGGTTGTGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG860.13411724342279682No Hit
GTAGGGGGTTGGGGTTGGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG760.11852221511782043No Hit
GTAGGGGTTTGGGGGTGGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG700.10916519813483462No Hit
GAAGGGGGTTGTGGGTTGGGTTCCGGGCGGGGGGGGGGGGGGGGGGGGGG690.10760569530433699No Hit
GAAGGGGGTTTGGGGTTGGGTTCCGGGCGGGGGGTGGGGGGGGGGGGGGG670.10448668964334171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)