FastQCFastQC Report
Fri 28 Jan 2022
HHHNCAFX3_n01_11837-Input.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHHNCAFX3_n01_11837-Input.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13280605
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGGTGG499930.3764361638645227TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGTTGG294390.22166911823670682TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGTTTG211100.1589536018878658TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGGTTG210870.15878041700660472TruSeq Adapter, Index 8 (97% over 42bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)