FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n02_1800_d02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n02_1800_d02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTATACAAACCGCCAACAATGGCACCCAACATGAAACACCTAAAATTGG110.0No Hit
GAATCGGGCTCTCTGCTCAGCGGGGAGCCTGCTTCCCCCCTCTCTCTGTC110.0No Hit
AAAGAGGGAAAAGCAGAGTCCCTGCCAAGCAGGGAGCCCGACCTGGGCTC110.0No Hit
TTTATATAGAGGAGGACATCACATGTTTTCCTGCTAGGGTTATTTTTCTA110.0No Hit
GGTACCAGGGGTTCCATATCAATGTTCCCTTTGGAAAGGATGCAATTCAA110.0No Hit
CTACACATTTGGTGGAATGGCAGTGCATGAAACCGCTCCCTGATGAAACA110.0No Hit
ATATTATGTAGCTTAGGGTATTAGAATATCATAAATATTTTTTAAAGGCC110.0No Hit
CTCAACTTATTGAAATAACTACAAATATAAACAGAACTATGCTGACAAGT110.0No Hit
CCACTGAGCCACCCAGGTGCCCTGGGTATTTAGTTCTTGAAAGTGGTCAA110.0No Hit
GCAACTTGTGTGAGAGTATATTTAGTGCATGTGTGTCCTGGTCTGTCGCT110.0No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)