FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n02_1794_d06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n02_1794_d06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACCTCGGCCCCTGCAAACACCATTCTACGTTCTGTTTCTAGGCCTA17.142857142857142No Hit
ATCCTGTATTTTATCAGGCAACCATTGAGCCCAGGGAGAGTCAGGACATT17.142857142857142No Hit
TTATAAAGCAAGTATCAAAGCTTGGGTCTCAAGCCTCTATTACCATCTTA17.142857142857142No Hit
GTATGTAATAAAGAACTCATAAATGGTAGTTCTGAGCTCTTTTTATGAAA17.142857142857142No Hit
AAGGGAGTTTTACTAGTTGTCTTCTGGAAACTGGTTCCATGCTGCAGTGA17.142857142857142No Hit
ACACAAGCATCCGCCAGCTCTACCCTTCAGTAGTTAAGCATCCTGGGGTA17.142857142857142No Hit
GCTTCCTGTTTTTGTTTTTGTTTAATGCTTTTTAAATTCATTTTTCCAAC17.142857142857142No Hit
ATTCTGATGAGTATACCAGAATTTTGGTGGACCGATATGGTAGCTGAAAA17.142857142857142No Hit
ACCTTTGGGATATCAAGGTCAGGTGCCAGTGATATGTCAACTGTGTGGCA17.142857142857142No Hit
TCCATATGCTGCCCACTTAACAACATAAACCCAACCGGCTGATCCCGCTC17.142857142857142No Hit
GTGAGTAACCAGCTTCCCCAGCCTTTCAGGGCACTGCATGAAGAACCCAC17.142857142857142No Hit
AATAAACATTGAGTGACTAAACACCACCAAGGTGGTGATCAATCTGTCAG17.142857142857142No Hit
ATTTATAACCTCATCACAAATGCTCATACTACTCTTGCCCTCATTTGTGG17.142857142857142No Hit
TAAGTGGGACCTACCTCTCCAAACTGTTGAGCCCATAGATCTCAAACTAC17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)