FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n02_1790_d06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n02_1790_d06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCCATGTGGGTCAGTGAAGGAGCGGAACAAAAATTGACACGGGGACA17.6923076923076925No Hit
CTCCTACTCCTCCCATAGGTGACCTTCCTTTCACAAGAGCAGAATCATAT17.6923076923076925No Hit
GATGAGAGATTTCATGGTGTCAGCATGGGTTCTGGAAGGAGTACCAACCA17.6923076923076925No Hit
TTACTGCCCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA17.6923076923076925No Hit
CTCCTTGCTCAGCAGGAAGCCTGCTTCTCTCTCTGTCCCTCCCCCTGCTT17.6923076923076925No Hit
ATTCTGAACACCTGTGAACTCAACCTGAGATCTGAGAAAAGAACTATTCT17.6923076923076925No Hit
GTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTGAGTCC17.6923076923076925No Hit
CCTTGCCTCCTCTGCCATTTGGCCATTTTCTGGTTTAGGATGTGGCCCTG17.6923076923076925No Hit
CATCACAGCTTAGCGTTCTCAGTGATTTTTTGAAAAAAAAAAAAAAAAGA17.6923076923076925No Hit
CTACTTTTGACATAAACCATACGATGATTTATAGGTTTCTTTTCCCATTC17.6923076923076925No Hit
TGTTTCTTCTACTAACTTTGGACTTTATTTGTTCTTTTCTGTTTCCTTGA17.6923076923076925No Hit
ACAACAGCTAACCCTCACCACAGCTGCTCTGCTGCCCTGCCGTTGCAACT17.6923076923076925No Hit
GTGCTGGTCAATCAGGTCTGACGGCCGAGGACCAAGGCCATGGCCACCTG17.6923076923076925No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)