FastQCFastQC Report
Thu 10 Sep 2020
HHH35BGXF_n02_1788_d06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n02_1788_d06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14041
Sequences flagged as poor quality0
Sequence length151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTAGAT100.0069804452145.25092
CGGCGTC100.0070557846144.732139
TCTACAC203.7598252E-4108.938173
TTCTACA259.1296074E-487.150542
AGGGAGG450.009378321548.4169656
GGGGGGG4503.3071046E-711.297292145
Produced by FastQC (version 0.11.5)