FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n01_1805_d10.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n01_1805_d10.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGAACAACATATTAAAAATTATATAGGAATAGACATAAAATATAGAT17.6923076923076925No Hit
AGCAAGGAAACCCCGGGCAAGGAGCCCTGTCCCCAGGCTCGGGAGAAGTT17.6923076923076925No Hit
CTGCCTGGTACTTCCTTATTTTAGCACAGGTCACCATATAATAGCTACAG17.6923076923076925No Hit
ATCTCGCTGAGAATCTGTCAGCTTTGTTCTTTTCAAAGAACCAGCTGTTT17.6923076923076925No Hit
CTGTGTCGTCTCCATTCCTGGTCAGCGGGTAACAGCACCGCCTCGCAGAG17.6923076923076925No Hit
GTGTGGAGCCTGGTGCAGGTCTCTCTCCCAGGAGCTTGGGTTCTTGAATT17.6923076923076925No Hit
AGCTAGATTACAGGGAGATGATCAAGGATCTGACTGTGATAATTAGACAA17.6923076923076925No Hit
GACTAATGACCAGTAGAGAGATTAAATAAGAAATCAAAAACTTCCAACAA17.6923076923076925No Hit
GAATTATCTTCACAGAGAAATTGTGCTTGAGATTGGTGTTGGAAAAATGA17.6923076923076925No Hit
GTGGTACAGGGTGTGGGGACCAGCCAGGCGGCAGAAGAACAGGTCGGGGT17.6923076923076925No Hit
GTATTAAAGTTCCCTATGATATTGGTGCTGATTGCTTCTCTTAGGTTTGT17.6923076923076925No Hit
GCAAACACCATGTGTGTGCTAGCCGAGTTGCTCATGCTTGGGCCGAGCGA17.6923076923076925No Hit
GTTAAGGTGGCACAGGAGGTCCTTTAAACCTAATCCTCGCTGGGCAGTCG17.6923076923076925No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)