FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n01_1802_d10.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n01_1802_d10.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAAAACAGAATTTGCCTGGCGGCCTTAGCGCGGTGGTCCCACCTGACC15.0No Hit
TTCTTACTCTATCTACCATCAGTGAAAGATTTGGAGTCTTCTCTTCATTG15.0No Hit
GTCTTCCGACTGGGCTCTTCGCTTAATTTGATGCCTGGCAGTTCCCTACT15.0No Hit
GCGGCGCATCCGGCATTTATTCCGCACCAACGCAAAAAAGACCACTCTTC15.0No Hit
CTCACGGCATGAGGAGGGGGAGGAACTCGTTGCGATTTGGTGTCGTTCTG15.0No Hit
TGCCGTGCCAACAAACCAGTTGGAAGTAACACGTCGTTCAAGTAATGCCC15.0No Hit
GGATTAATACAACACCCAGACTCACCAACATACCGATGCGAAGATCAATA15.0No Hit
TACCTGTACGTTGCACGACTGTAGTGGCAACCGCAGCCAGTCGGATTCCG15.0No Hit
CCCTGGTTCCTACCACAGGGTAGAGTTGTGTTTATTTTTATTAACCAACA15.0No Hit
GGTTAAGAAGGGGGCAGTTAGGATTCAGCCCAAGTGTGGTGTTCGGCGAG15.0No Hit
ATGGTAGATAGAGTAAGAAATTTGGTTTCTTGAAGTCCTCCATCCCCTAC15.0No Hit
GTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGC15.0No Hit
AGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTA15.0No Hit
GGGCAGAGGATCCCGAGCAGACGCCCGCTGAGCACGGAGCCCGGTTGGGG15.0No Hit
GCCATACCCTTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATC15.0No Hit
TTTTTATTGTAGGTTAAAATCCTATAAGTACAATAATAAAACATTTTTTC15.0No Hit
GTTTCTTAACTTGTTGTTGCTTTTTTCTAATATTTATTACTTATTTTGTG15.0No Hit
ATGCTCTGTCATGTGGCTCCGGGTCATTAATACCCGAGTTCTGGGAAGCT15.0No Hit
ATTAAGCGAAGAGCCCAGTCGGAAGACTGGGCTTTTTTGCGTTGGTGCGG15.0No Hit
AGGCTGGACCTTGGGCCCAGAGTTGGCCAGCTTCTGCCTGAGGCAATGGT15.0No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)