FastQCFastQC Report
Thu 10 Sep 2020
HHH35BGXF_n01_1802_d08.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n01_1802_d08.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21862
Sequences flagged as poor quality0
Sequence length151
%GC49

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGCC100.007043802145.03
GAGACCG100.007043802145.05
CGGGATG100.007043802145.03
TTATACA350.003520005662.1428572
AGCCTGT450.00951439148.3333326
Produced by FastQC (version 0.11.5)