FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n01_1800_d02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n01_1800_d02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAGAATATCATCTTCCCAGGACAAAATACAGAGACAGACAGACAGGCA110.0No Hit
GTCATGGCCCCTGTCGAGTGAGCTAAGAAGGAGAGGGAAGGTGAGCTAGT110.0No Hit
ACACTAGACTGGCTAAAATTTACAATGCTGATATTATCAAGTGTTGGTGA110.0No Hit
GCCTTCGAGACTTTGAACCGCGTCCTATGCACTTTCTGGTGATGTTTCCC110.0No Hit
CAATATAGCAATTGACTTGTTGTCCATAAGAATTAACATAAGCTGCTTCC110.0No Hit
TTTTTAGGAAGATGGCTGACGTTTCTTAACTTGGATTTTTTATTGACCTG110.0No Hit
GGGTAGCACATGTGTGTAATAGGGCAGGCCCTCAAAGCAGACAGAGACCT110.0No Hit
CATGTGTCAAAGCCTCCAATCATGTGCTTTGTGTGTGAGCCCCAGTACCT110.0No Hit
ATTTTAGAGTCATCCCTAACACTGAAATATAATTTGGCGTTTTGTTCATA110.0No Hit
GTTTAAAATATCGCCAGCATAGTTGGCCTTTCATATGTTTTATTTTTTTT110.0No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)