FastQCFastQC Report
Mon 14 Sep 2020
HHH35BGXF_n01_1790_d06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHH35BGXF_n01_1790_d06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCGTTCCCTGGGAAGGCAGTGAGGAGGTACTTTACATCGGCAGCTCC17.6923076923076925No Hit
GTCCTAGAACTTAAAAAAAAAATCTCATTTTGATTTATGGTTTAAAATTG17.6923076923076925No Hit
TTGAGGGAAGTGTGAGGTATTAAAGTTCCCTATGATATTGGTGCTGATTG17.6923076923076925No Hit
ACTTGATACCTCAAGGAAACAGAAAAGAACAAATAAAGTCCAAAGTTAGT17.6923076923076925No Hit
ATATTTAGGAGGACTACGTGGCAACAGGTACGGATTTAGTGTTTCTTGAC17.6923076923076925No Hit
GTAGTATGTAGGCCATTTCCCAGTAGTGTGACCCCACTTTCCATAGCTGG17.6923076923076925No Hit
GCTGAAAGCCCCCTCCTCTGCTCTTTGATTGCAGCTGGATTCCCTGCTGA17.6923076923076925No Hit
CTATTAGTCAGTGGAGCTCTGTGACTCCTGATCTTGTGGTTTTGAGTTTC17.6923076923076925No Hit
GGCCCAGAGACGACCCAAACCTGGATTCAAAGAGCTCTGGAGCTAGAAGG17.6923076923076925No Hit
GACCACGGTAGCAGTGGTGGTGCTGTTGGAAACACAGTGACCAGGGCAGT17.6923076923076925No Hit
ACCCTGAGATCATGACCTGAGCTGAAGGCAGAGGCTTTTACCCACTGAGC17.6923076923076925No Hit
GGCTTGGGCAATTCTCTTGTGCTCAGTCACTAGCTGGAACAGCCAGACCT17.6923076923076925No Hit
ACAAAAGACTGATCAAGAGATTGAAGCAAGAAGGGGAAAAGAAACCTATA17.6923076923076925No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)