HHGW2AFX2_n02_ncm11-9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8822141
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	194739	2.2073893400706246	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	106901	1.2117353372611024	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	16175	0.18334551669487031	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	39830	43.987724	49
CGCCGTA	42990	43.95285	47
TCGCCGT	43075	43.703617	46
CGTATCA	40470	43.525593	50
GGTCGCC	47410	42.84485	44
GTCGCCG	45960	42.71167	45
GCCGTAT	45310	42.49116	48
CTCGGTG	38865	42.36108	38
GTGGTCG	47895	42.076046	42
TGGTCGC	47825	41.947365	43
GATCTCG	38240	41.7275	35
TCTCGGT	39200	41.678825	37
ATCTCGG	39470	41.677475	36
GTATCAT	39605	41.30377	51
GGTGGTC	48685	41.192	41
TCGGTGG	46145	40.607815	39
AGATCTC	40100	40.045357	34
CGGTGGT	48500	40.03577	40
TAGATCT	43245	38.929813	33
GAGTGTA	51555	38.655598	28