HHGW2AFX2_n02_ncm11-8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10254110
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	271117	2.6439837294509227	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	127360	1.2420385581976399	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	21239	0.2071267033413919	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	54175	44.316784	49
CGCCGTA	59480	44.153473	47
TCGCCGT	59715	43.827328	46
CGTATCA	55365	43.661133	50
GCACACG	3105	43.058777	18
GGTCGCC	65325	42.924427	44
GTCGCCG	63645	42.880707	45
GCCGTAT	62365	42.55988	48
GTGGTCG	65565	42.4419	42
CTCGGTG	54475	42.332485	38
TGGTCGC	65545	42.139816	43
GTATCAT	53835	41.976566	51
ATCTCGG	55150	41.94169	36
TCTCGGT	54735	41.792908	37
GATCTCG	54015	41.79276	35
GGTGGTC	67400	41.2137	41
TCGGTGG	63920	40.851254	39
AGATCTC	55890	40.57875	34
GTGACTG	4980	39.689877	1
TAGATCT	59530	39.66142	33