HHGW2AFX2_n02_ncm11-7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7865481
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	109976	1.398210738796521	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	57731	0.7339792696721281	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	8327	0.10586765132354907	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	25055	42.42292	47
TCGCCGT	25290	41.807564	46
CCGTATC	23655	41.58992	49
GGTCGCC	27445	40.97325	44
GCACACG	2005	40.8462	18
CGTATCA	24285	40.798965	50
GTCGCCG	26840	40.788445	45
CTCGGTG	23530	40.517593	38
GCCGTAT	26710	40.371117	48
GTGGTCG	27835	40.22314	42
TCTCGGT	23700	39.97693	37
ATCTCGG	23925	39.95207	36
TGGTCGC	27930	39.84849	43
GATCTCG	23575	39.669273	35
GGTGGTC	28525	39.029068	41
TCGGTGG	27465	38.81508	39
GTATCAT	24525	38.11644	51
AGATCTC	25045	37.70474	34
CGGTGGT	29160	37.567043	40
TAGATCT	26770	36.412617	33