HHGW2AFX2_n02_ncm11-6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8705013
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	237179	2.7246254543215502	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	137347	1.5777920147850442	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTGGCC	10819	0.12428470813311823	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	46640	47.477077	49
CGTATCA	48900	46.821342	50
CGCCGTA	48215	46.804756	47
TCGCCGT	47970	46.518505	46
GTATCAT	48190	45.317642	51
GTCGCCG	55425	45.092102	45
GGTCGCC	55990	45.03713	44
GCCGTAT	53475	44.825333	48
CTCGGTG	53055	44.481457	38
GTGGTCG	56270	44.44606	42
TGGTCGC	54030	44.41696	43
ATCTCGG	54380	44.138535	36
TCTCGGT	52870	44.06856	37
GATCTCG	53695	44.023727	35
GGTGGTC	57290	43.556744	41
AGATCTC	53640	43.40986	34
TCGGTGG	60970	42.67279	39
CATTAAA	56860	42.384037	55
TATCATT	51990	42.341915	52
ATCATTA	54420	42.33553	53