HHGW2AFX2_n02_ncm11-5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8330960
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	321589	3.8601673756685906	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	123664	1.4843907544868777	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	25020	0.3003255327117163	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGACTGG	5220	45.75537	2
GTGACTG	5205	45.718605	1
GACTGGA	5845	43.126137	3
CCGTATC	69420	40.478413	49
CGTATCA	70625	40.075188	50
CGCCGTA	76705	39.882416	47
GTATCAT	66345	39.658905	51
TCGCCGT	76720	39.568977	46
GTCGCCG	82345	38.646835	45
GCCGTAT	80320	38.47544	48
CTCGGTG	70540	38.46796	38
GGTCGCC	85075	38.45547	44
GCACACG	2110	38.316566	18
GGTGGTC	84595	38.28524	41
TCTCGGT	70270	38.207577	37
GTGGTCG	85055	38.20186	42
ATCTCGG	71145	38.155598	36
TGGTCGC	84415	38.12664	43
GATCTCG	69375	38.044403	35
CATTAAA	74600	37.944508	55