HHGW2AFX2_n02_ncm11-4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9082613
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	235423	2.5920183982296727	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	93638	1.0309588220922767	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	18403	0.20261790301975874	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	46790	43.58456	49
CGCCGTA	51030	43.248302	47
CGTATCA	47655	43.094543	50
TCGCCGT	51080	42.99381	46
GTCGCCG	54165	42.21257	45
GGTCGCC	55985	42.065567	44
GCCGTAT	53640	41.7901	48
CTCGGTG	46690	41.60272	38
TGGTCGC	55985	41.484642	43
GTATCAT	46265	41.431976	51
GTGGTCG	56610	41.366665	42
TCTCGGT	46720	41.141747	37
ATCTCGG	47135	41.0988	36
GATCTCG	46195	40.889565	35
GGTGGTC	57170	40.692104	41
TCGGTGG	54465	40.238873	39
AGATCTC	48105	39.550667	34
CGGTGGT	57160	39.425648	40
TAGATCT	51055	38.999786	33
CATTAAA	53245	38.577206	55