HHGW2AFX2_n02_ncm11-2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8998633
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	157900	1.754710965543322	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	85927	0.9548894815468082	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	34075	43.045776	49
CGCCGTA	35350	42.888947	47
CGTATCA	35510	42.212994	50
TCGCCGT	35430	42.150024	46
GCCGTAT	38785	40.777905	48
GGTCGCC	40795	40.43286	44
GTCGCCG	40365	40.29156	45
GTATCAT	35275	40.073345	51
GTGACTG	3965	40.040123	1
GTGGTCG	40920	39.78785	42
CTCGGTG	38265	39.66941	38
TGGTCGC	39985	39.58912	43
ATCTCGG	39280	39.357838	36
GCACACG	2240	39.06055	18
TCTCGGT	38420	39.05453	37
GATCTCG	38965	38.975372	35
AGATCTC	39565	38.03973	34
GGTGGTC	42905	37.947063	41
TCGGTGG	44155	37.887363	39
TAGATCT	41965	36.82338	33