HHGW2AFX2_n02_ncm11-20.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-20.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8885968
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	138239	1.5556999530045574	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76466	0.8605252686032631	No Hit
GGTGTTGTATTACGGGCTCGAGTAATACCGGAGTGTCTTGACAATCCTAA	11522	0.12966510795447383	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	29460	44.561478	47
TCGCCGT	29490	43.982094	46
CCGTATC	28060	43.916576	49
GGTCGCC	32820	43.486446	44
GTCGCCG	32035	43.350307	45
CGTATCA	29090	42.758636	50
GTGGTCG	33345	42.27722	42
GCACACG	2065	42.202362	18
GCCGTAT	31725	42.019855	48
CTCGGTG	29160	41.996338	38
TGGTCGC	33515	41.68684	43
TCTCGGT	29175	41.532055	37
ATCTCGG	29740	41.390076	36
GATCTCG	29150	41.35132	35
GGTGGTC	34545	40.818756	41
TCGGTGG	33760	40.56534	39
AGATCTC	30320	39.82557	34
CGGTGGT	35570	39.268612	40
GTATCAT	29825	39.2641	51
GTAGGGA	38995	38.52195	19