HHGW2AFX2_n02_ncm11-1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7178658
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	102568	1.4287907294093132	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	57247	0.7974610296242	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	8715	0.12140152100852275	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	2165	43.162693	18
CGCCGTA	23335	41.829613	47
TCGCCGT	23510	41.518246	46
CCGTATC	21365	41.412014	49
GGTCGCC	25870	41.20753	44
GTCGCCG	25145	40.474907	45
GTGGTCG	26190	40.303707	42
CTCGGTG	21335	40.14233	38
CGTATCA	22265	40.115307	50
GCCGTAT	25290	39.73137	48
TGGTCGC	26565	39.60302	43
TCTCGGT	21440	39.505527	37
ATCTCGG	21650	39.41333	36
GGTGGTC	26885	39.09259	41
AGAGCAC	4355	38.816845	15
GATCTCG	21280	38.815723	35
AGCACAC	3635	38.609585	17
GAGCACA	4180	38.348152	16
TCGGTGG	25475	38.302822	39
AGATCTC	22480	37.18043	34