HHGW2AFX2_n02_ncm11-19.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-19.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9175574
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	486139	5.298186249710373	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	194644	2.1213277774229713	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	35850	0.39071125141598767	Illumina Single End PCR Primer 1 (98% over 50bp)
GGTGTTGTATTACGGGCTCGAGTAATACCGGAGTGTCTTGACAATCCTAA	15991	0.17427792528293054	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTAGGTGGTCGCC	11967	0.13042235831785565	Illumina Single End PCR Primer 1 (98% over 50bp)
TAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	11390	0.12413392339269456	Illumina Single End PCR Primer 1 (100% over 49bp)
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	9691	0.10561737064079042	Illumina Single End PCR Primer 1 (100% over 49bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	91785	46.36602	49
GTGACTG	5685	46.352673	1
CGTATCA	93125	45.995743	50
CGCCGTA	100025	45.958076	47
TCGCCGT	100040	45.68531	46
GTATCAT	88090	45.653236	51
GTCGCCG	106175	44.7299	45
GCCGTAT	104625	44.680065	48
CTCGGTG	91250	44.649265	38
GGTCGCC	109530	44.573986	44
TCTCGGT	90835	44.47663	37
GTGGTCG	109070	44.325825	42
GGTGGTC	109020	44.22738	41
GATCTCG	90310	44.184864	35
ATCTCGG	92400	44.17786	36
TGACTGG	5985	44.117683	2
TGGTCGC	109260	43.966866	43
CATTAAA	97795	43.950096	55
TCGGTGG	104795	43.80273	39
AGATCTC	92100	43.56956	34