HHGW2AFX2_n02_ncm11-17.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-17.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8964776
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	181737	2.0272341439429162	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76471	0.853016293993291	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	15301	0.17067911122374949	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	37055	46.516518	47
TCGCCGT	37260	46.12909	46
CCGTATC	34685	46.062435	49
GGTCGCC	41035	45.160557	44
GTCGCCG	39735	45.114292	45
CGTATCA	35755	44.987415	50
CTCGGTG	34080	44.590305	38
GTGGTCG	41260	44.541313	42
GCCGTAT	39455	44.36138	48
ATCTCGG	34480	44.11386	36
TCTCGGT	34220	43.96859	37
GATCTCG	33930	43.714924	35
GGTGGTC	42095	43.516205	41
TGGTCGC	42215	43.260098	43
TCGGTGG	40115	43.238667	39
CGGTGGT	42360	42.145107	40
AGATCTC	35625	42.037807	34
GTATCAT	35615	42.009834	51
TAGATCT	38200	40.770805	33
GTAGGGA	48185	40.43565	19