HHGW2AFX2_n02_ncm11-15.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-15.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8204561
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	139198	1.696592907286569	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	58281	0.7103487925801271	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	11220	0.1367532034925452	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	32525	43.06329	47
CCGTATC	29910	42.89666	49
TCGCCGT	32795	42.4633	46
GGTCGCC	35645	42.121468	44
GCACACG	2020	42.102474	18
CGTATCA	30825	41.963947	50
GTCGCCG	34620	41.882763	45
GCCGTAT	35070	41.035976	48
CTCGGTG	29460	40.822006	38
GTGGTCG	36525	40.570778	42
TGGTCGC	36430	40.513256	43
ATCTCGG	29890	40.21107	36
TCTCGGT	29620	40.164284	37
GATCTCG	29390	40.12109	35
GGTGGTC	37110	39.506824	41
TCGGTGG	34720	39.393772	39
GTATCAT	31430	38.55051	51
AGATCTC	30920	38.464058	34
CGGTGGT	36790	38.280792	40
TAGATCT	33150	37.396957	33