HHGW2AFX2_n02_ncm11-13.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-13.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8313002
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	121403	1.460399023120649	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	66224	0.7966315898877444	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	25615	44.4873	47
TCGCCGT	25875	43.93234	46
CCGTATC	24430	43.765953	49
GGTCGCC	28090	43.53286	44
GTCGCCG	27825	43.00437	45
CGTATCA	25290	42.74819	50
CTCGGTG	24675	42.53813	38
GTGGTCG	28555	42.33421	42
ATCTCGG	24990	42.18477	36
TGGTCGC	28370	42.141483	43
TCTCGGT	24775	41.94364	37
GCCGTAT	27570	41.87905	48
GATCTCG	24840	41.65046	35
GGTGGTC	29435	40.913998	41
TCGGTGG	28515	40.85913	39
AGATCTC	25995	39.974895	34
CGGTGGT	30430	39.254154	40
TAGATCT	27915	38.629673	33
CGTGTAG	33325	38.55411	16
TGTAGGG	33085	38.537357	18