HHGW2AFX2_n02_ncm11-12.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-12.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8942471
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	299730	3.3517581438061135	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	131585	1.4714612996788023	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	25428	0.2843509361115065	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	57290	45.6467	49
CGCCGTA	63420	45.301285	47
CGTATCA	58285	45.197712	50
TCGCCGT	63540	44.940327	46
GTATCAT	55550	44.077515	51
GTCGCCG	67695	43.996635	45
GGTCGCC	69865	43.89773	44
CTCGGTG	56970	43.716797	38
GCCGTAT	66365	43.713383	48
TCTCGGT	56900	43.4827	37
GTGGTCG	70285	43.39664	42
TGGTCGC	69895	43.283264	43
ATCTCGG	57735	43.241806	36
GATCTCG	56350	43.217667	35
GGTGGTC	70490	43.027145	41
TCGGTGG	67210	42.627434	39
AGATCTC	58315	42.127743	34
CGGTGGT	70620	41.877464	40
CATTAAA	63350	41.8605	55
TAGATCT	61870	41.647495	33