HHGW2AFX2_n02_ncm11-10.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGW2AFX2_n02_ncm11-10.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8105152
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	131803	1.6261632107577992	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	81338	1.0035345419802122	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	9477	0.1169256295255166	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	26785	46.294056	47
TCGCCGT	26980	45.622192	46
CCGTATC	25125	45.60562	49
GGTCGCC	29955	44.73675	44
CGTATCA	25770	44.6407	50
GTCGCCG	29135	44.614426	45
GCCGTAT	28385	44.436684	48
TGGTCGC	29875	43.907635	43
CTCGGTG	25385	43.74657	38
GTGGTCG	30430	43.4631	42
ATCTCGG	25725	42.978176	36
TCTCGGT	25685	42.581818	37
GATCTCG	25425	42.466385	35
TCGGTGG	30450	41.813942	39
GGTGGTC	31535	41.76256	41
GTATCAT	25880	41.462578	51
CGGTGGT	31965	40.71901	40
AGATCTC	26750	40.415993	34
GAGTGTA	33815	39.404274	28
GTAGGGA	35480	39.299965	19